Save fitted individual trajectory plots

Computes individual trajectory summaries once, then reuses them for each participant figure. PNG and one-file-per-participant PDF output are supported, as is a single multi-page PDF.

Usage

save_individual_plots(
  x,
  path,
  participants = NULL,
  format = c("png", "pdf"),
  multipage = FALSE,
  file = "individual-trajectories.pdf",
  times = 0:150,
  ndraws = 500,
  probs = c(0.025, 0.975),
  scale = c("response", "model"),
  biomarkers = NULL,
  central = c("median", "mean"),
  width = 7.2,
  height = 4.8,
  dpi = 300,
  overwrite = FALSE
)

Arguments

x

An epikinetics_fit or summarised individual prediction object.

path

Output directory, created if necessary.

participants

Optional participant subset.

format

"png" or "pdf".

multipage

For PDF output, write one multi-page file rather than one file per participant.

file

Filename for a multi-page PDF.

times, ndraws, probs, scale, biomarkers

Passed to predict() when x is a fit.

central

Plot the posterior median or mean trajectory.

width, height

Figure dimensions in inches.

dpi

Raster resolution for PNG output.

overwrite

Replace existing output files.

Value

The output paths, invisibly.