Package index • epikinetics

All functions

align_time_to_reference(): Align longitudinal measurements to a reference date
cmdstan_fit(): Access the underlying CmdStanR fit
compile_epikinetics_model(): Compile the threaded epikinetics Stan model
diagnose_epikinetics(): Summarise sampling diagnostics
epikinetics_data(): Extract prepared model data
plot(<epikinetics_priors>) epikinetics_priors(): Plot prior kinetic trajectories
fit_epikinetics(): Fit a hierarchical biomarker kinetics model
plot(<epikinetics_fit>): Plot an epikinetics fit
plot(<epikinetics_prediction>): Plot posterior trajectory predictions
plot_epikinetics_data(): Plot prepared epikinetics observations
plot_individual(): Plot fitted individual trajectories
posterior_draws(): Extract raw posterior draws
posterior_parameters(): Extract labelled kinetic parameters
predict(<epikinetics_fit>): Predict biomarker trajectories
prediction_grid(): Construct default covariate profiles for prediction
prepare_epikinetics_data(): Validate and prepare data for epikinetics
save_individual_plots(): Save fitted individual trajectory plots
stan_data(): Access the exact Stan data list
summary(<epikinetics_data>): Summarise prepared epikinetics model data