All functions

abkineticsFunction

Define the function form of th antibody kinetics

abkineticsModel

Define antibody kinetics model

addAbkineticsModel()

addAbkineticsModel

addCopModel()

addCopModel

addExposurePrior()

This function adds the exposure prior to the rjmc model.

addObservationalModel()

addObservationalModel

add_par_df()

add_par_df

copLogLikelihood

Define the Log Likelihood function for the COP model

createSeroJumpModel()

createSeroJumpModel

data_known_exposures_ex1

Input the known exposures

data_titre_ex

Input the serological data

makeModel()

makeModel

obsLogLikelihood

Define the Log Likelihood function for the observational model

observationalModel

Define observational model

plotMCMCDiagnosis()

Postprocess the posteriors of the simulation study

plotPostFigs()

plotPostFigs

plotPostFigsSim()

plotPostFigs

plotPriorInfection()

A plotting function for the prior on the infection rate

plotPriorPredictive()

A plotting function for the prior predictive distribution of the antibody kinetics

plotSero()

A plotting function for the serological data

rjmc_sero_func()

Create a model

runSeroJump()

run the RJMCMC algorithm