Beta binomial infection history prior — infection_history_prior • serosolver

Calculates the beta binomial infection history prior for each individual, taking into account the number of years they could be infected.

infection_history_prior(pars, infection_history, age_mask)

Arguments

pars: the named parameter vector with infection_model_prior_shape1 and infection_model_prior_shape2 corresponding to the beta binomial distribution
infection_history: the infection history matrix
age_mask: the age mask, giving the first index of the infection_history matrix that each individual can be exposed to. One entry per individual

Value

the log prior contribution for each individual

See also

Other priors: calc_phi_probs(), calc_phi_probs_indiv(), calc_phi_probs_spline(), create_prob_shifts(), dbb_prior(), density_beta_binom(), find_beta_prior_mode(), find_beta_prior_with_mean(), find_beta_prior_with_mean_var(), fit_beta_prior(), fit_normal_prior(), inf_mat_prior(), prob_shifts()