Plot biomarker states and immune histories for a subset of individuals

plot_subset_individuals_history(
  biomarker_states,
  immune_histories,
  subset,
  demography,
  removal = FALSE,
  heatmap = FALSE
)

Arguments

biomarker_states: The reshaped data set containing biomarker quantities for individuals at all time steps for each biomarker
immune_histories: The reshaped data set containing immune history for individuals at all time steps for each exposure event
subset: The number of individuals you want to plot
demography: Tibble of removal time for each individual
removal: Set to TRUE if individuals are removed during the simulation and removal time is present in demogrpahy; defaults to FALSE
heatmap: if TRUE, returns a heatmap of all biomarker states over time. Overwise plots each biomarker as a line.

Value

A plot of biomarker states and exposure histories for a subset of individuals is returned

Examples

plot_subset_individuals_history(example_biomarker_states,example_immune_histories,
3,example_demography)
#> Warning: Removed 37 rows containing missing values (`geom_line()`).