Total number of infections

Plots the total number of inferred infections in the MCMC chain as a trace plot and density plot

plot_total_number_infections(inf_chain, pad_chain = TRUE)

Arguments

inf_chain	the data table with infection history samples from serosolver
pad_chain	if TRUE, pads the infection history MCMC chain to have entries for non-infection events

Value

two ggplot2 objects

See also

Other infection_history_plots: calculate_infection_history_statistics(), generate_cumulative_inf_plots(), plot_data(), plot_infection_histories(), plot_infection_history_chains_indiv(), plot_infection_history_chains_time(), plot_number_infections(), plot_posteriors_infhist()

Examples

if (FALSE) {
data(example_inf_chain)
plot_total_number_infections(example_inf_chain)
}