Total number of infections

Plots the total number of inferred infections in the MCMC chain as a trace plot and density plot.

plot_total_number_infections(inf_chain, pad_chain = TRUE)

Arguments

inf_chain

the infection-history chain returned by load_mcmc_chains, in long format

pad_chain

if TRUE, adds zero-valued entries for infection events that are absent from the sparse chain

Value

A list containing the MCMC trace plot and posterior density plot.

See also

Other infection_history_plots: calculate_infection_history_statistics(), plot_antibody_data(), plot_antibody_predictions(), plot_cumulative_infection_histories(), plot_estimated_antibody_model(), plot_individual_number_infections(), plot_infection_history_chains_indiv(), plot_infection_history_chains_time(), plot_infection_history_posteriors(), plot_model_fits()

Examples

if (FALSE) { # \dontrun{
data(example_inf_chain)
plot_total_number_infections(example_inf_chain)
} # }