Create usable antigenic map

Creates an antigenic map from an input data frame that can be used to calculate cross reactivity. This will end up being an NxN matrix, where there are N strains circulating.

melt_antigenic_coords(anti.map.in)

Arguments

anti.map.in

can either be a 1D antigenic line to calculate distance from, or a two dimensional matrix with x and y coordinates on an antigenic map

Value

a matrix of Euclidean antigenic distances between each pair of entries in `anti.map.in`

See also

Other antigenic_maps: euc_distance(), generate_antigenic_map_flexible(), setup_antigenic_map()