R implementation of the infection history prior assuming common infection risk across individuals in a given year
inf_mat_prior(infection_history, age_mask, alpha1, beta1)
| infection_history | the infection history matrix |
|---|---|
| age_mask | the age mask, giving the first index of the infection_history matrix that each individual can be exposed to. One entry per individual |
| alpha1 | alpha parameter for beta distribution |
| beta1 | beta parameter for beta distribution |
a prior probability for each individual
Other priors:
calc_phi_probs_indiv(),
calc_phi_probs_spline(),
calc_phi_probs(),
create_prior_mu(),
create_prob_shifts(),
find_beta_prior_mode(),
find_beta_prior_with_mean_var(),
find_beta_prior_with_mean(),
fit_beta_prior(),
fit_normal_prior(),
infection_history_prior(),
prob_mus(),
prob_shifts()