Given a vector of FOIs for all circulating years, a matrix of infection histories and the vector specifying if individuals were alive or not, returns the log probability of the FOIs given the infection histories.
calc_phi_probs(phis, infection_history, age_mask, strain_mask)
| phis | a vector of FOIs |
|---|---|
| infection_history | the matrix of infection histories |
| age_mask | the age mask vector as returned by |
a single log probability
Other priors:
calc_phi_probs_indiv(),
calc_phi_probs_spline(),
create_prior_mu(),
create_prob_shifts(),
find_beta_prior_mode(),
find_beta_prior_with_mean_var(),
find_beta_prior_with_mean(),
fit_beta_prior(),
fit_normal_prior(),
inf_mat_prior(),
infection_history_prior(),
prob_mus(),
prob_shifts()