Check infection history matrix — check_inf_hist • serosolver

Checks that the infection history matrix is allowable given the birth dates and sampling times of the data

check_inf_hist(
  antibody_data,
  possible_exposure_times,
  inf_hist,
  verbose = FALSE
)

Arguments

antibody_data: the data frame of antibody data
possible_exposure_times: vector of times at which individuals could be exposed e.g., `seq(1968,2015,by=1)`
inf_hist: the infection history matrix, with nrows = number indivs and ncols = length(possible_exposure_times)
verbose: if TRUE, prints warning messages

Value

a single boolean value, FALSE if the check passes, otherwise throws an error

See also

Other check_inputs: check_attack_rates(), check_data(), check_demographics(), check_par_tab(), check_proposals()

Examples

data(example_antibody_data)
data(example_inf_hist)
times <- 1968:2015
check_inf_hist(example_antibody_data, times, example_inf_hist)
#> [1] FALSE